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2023

Bakshi, A.; Moin, M.; Gayatri, M.B.; Reddy, A.B.M.; Datla, R.; Madhav, M.S.; Kirti, P.B. Involvement of Target of Rapamycin (TOR) Signaling in the Regulation of Crosstalk between Ribosomal Protein Small Subunit 6 Kinase-1 (RPS6K-1) and Ribosomal Proteins. Plants 2023, 12, 176. https://doi.org/10.3390/plants12010176

Chandnani, R.; Kochian, L. V. The Role of the Root Microbiome in the Utilization of Functional Traits for Increasing Plant Productivity. 2023, 55–80. https://doi.org/10.1007/978-981-19-5029-2_3 

Han, X.; Akhov, L.; Ashe, P.; Lewis, C.; Deibert, L.; Irina Zaharia, L.; Forseille, L.; Xiang, D.; Datla, R.; Nosworthy, M.; Henry, C.; Zou, J.; Yu, B.; Patterson, N. Comprehensive Compositional Assessment of Bioactive Compounds in Diverse Pea Accessions. Food Research International 2023, 165, 112455. https://doi.org/10.1016/J.FOODRES.2022.112455 

Lyzenga, W. J.; Liu, Z.; Olukayode, T.; Zhao, Y.; Kochian, L. V; Ham, B.-K. Getting to the Roots of N, P, and K Uptake. J Exp Bot 2023. https://doi.org/10.1093/JXB/ERAD035 

2022

Bhattacharjee, A.; Banani Roy, C.; Kevin Schneider, C. A.; Roy, B.; Schneider, K. A. Supporting Program Comprehension by Generating Abstract Code Summary Tree. 2022, 22, 81–85. https://doi.org/10.1145/3510455.3512793.

Chen, J.; Ham, B.-K. Systemic Signaling: A Role in Propelling Crop Yield. Plants 2022, 11, 1400. https://doi.org/10.3390/plants11111400.

David, E.; Serouart, M.; Smith, D.; Madec, S.; Velumani, K.; Liu, S.; Wang, X.; Pinto, F.; Shafiee, S.; Tahir, I. S. A.; Tsujimoto, H.; Nasuda, S.; Zheng, B.; Kirchgessner, N.; Aasen, H.; Hund, A.; Sadhegi-Tehran, P.; Nagasawa, K.; Ishikawa, G.; Dandrifosse, S.; Carlier, A.; Dumont, B.; Mercatoris, B.; Evers, B.; Kuroki, K.; Wang, H.; Ishii, M.; Badhon, M. A.; Pozniak, C.; LeBauer, D. S.; Lillemo, M.; Poland, J.; Chapman, S.; de Solan, B.; Baret, F.; Stavness, I.; Guo, W. Global Wheat Head Detection 2021: An Improved Dataset for Benchmarking Wheat Head Detection Methods. Plant Phenomics 2021, 2021, 2023. https://doi.org/10.34133/2021/9846158.

Ebersbach, J.; Khan, N. A.; McQuillan, I.; Higgins, E. E.; Horner, K.; Bandi, V.; Gutwin, C.; Vail, S. L.; Robinson, S. J.; Parkin, I. A. P. Exploiting High-Throughput Indoor Phenotyping to Characterize the Founders of a Structured B. Napus Breeding Population. Front Plant Sci 2022, 12, 3192. https://doi.org/10.3389/FPLS.2021.780250.

Gao, P.; Qin, L.; Nguyen, H.; Sheng, H.; Quilichini, T.D.; Xiang, D.; Kochian, L.V.; Wei, Y.; Datla, R. Clustered Regularly Interspaced Short Palindromic Repeats/CRISPR-Associated Protein 9-Generated Diallelic Mutants Reveal Arabidopsis Actin-Related Protein 2 Function in the Trafficking of Syntaxin PEN1. Front Plant Sci 2022, 13, 3586. https://doi.org/10.3389/FPLS.2022.934002.

Gao, P.; Qiu, S.; Ma, X.; Parkin, I.A.P.; Xiang, D.; Datla, R. Spatiotemporal Transcriptomic Atlas of Developing Embryos and Vegetative Tissues in Flax. Plants 2022, 11, 2031. https://doi.org/10.3390/plants11152031.

Gao, P., Xia, H., Li, Q., Li, Z., Zhai, C., Weng, L., Mi, H., Yan, S., Datla, R., Wang, H., & Yang, J. PALE-GREEN LEAF 1, a rice cpSRP54 protein, is essential for the assembly of the PSI-LHCI supercomplex. Plant Direct 2022, 6(8), e436. https://doi.org/10.1002/pld3.436.

Gladman, N., Hufnagel, B., Regulski, M., Liu, Z., Wang, X., Chougule, K., Kochian, L., Magalhães, J., Ware, D. Sorghum root epigenetic landscape during limiting phosphorus conditions. Plant Direct 2022, 6(5), e393. https://doi.org/10.1002/pld3.393.

Gómez-Mena, C.; Honys, D.; Datla, R.; Testillano, P. S. Editorial: Advances in Pollen Research: Biology, Biotechnology, and Plant Breeding Applications. Front. Plant Sci. 2022, 13, 899. https://doi.org/10.3389/FPLS.2022.876502/BIBTEX.

Huang, D.; Stavness, I. Large Growth Deformations of Thin Tissue Using Solid-Shells. IEEE Trans Vis Comput Graph 2023, 29 (03), 1893–1909. https://doi.org/10.1109/TVCG.2022.3217008.

Jia, Z.; Gao, P.; Yin, F.; Quilichini, T. D.; Sheng, H.; Song, J.; Yang, H.; Gao, J.; Chen, T.; Yang, B.; Kochian, L. V.; Zou, J.; Patterson, N.; Yang, Q.; Gillmor, C. S.; Datla, R.; Li, Q.; Xiang, D. Asymmetric Gene Expression in Grain Development of Reciprocal Crosses between Tetraploid and Hexaploid Wheats. Communications Biology 2022 5:1 2022, 5 (1), 1–15. https://doi.org/10.1038/s42003-022-04374-w.

Mardanisamani, S.; Eramian, M. Segmentation of Vegetation and Microplots in Aerial Agriculture Images: A Survey. The Plant Phenome Journal 2022, 5 (1), e20042. https://doi.org/10.3389/FRAI.2022.871162.

Mostafa, S.; Mondal, D.; Beck, M. A.; Bidinosti, C. P.; Henry, C. J.; Stavness, I. Leveraging Guided Backpropagation to Select Convolutional Neural Networks for Plant Classification. Front Artif Intell 2022, 5, 98. https://doi.org/10.3389/FRAI.2022.871162.

O. Vasquez, H. Hesseln and S. J. Smyth. 2022. Canadian Consumer Preferences Regarding Gene-Edited Food Products. Frontiers in Genome Editing, 4, 854334.

Pixley, K. v.; Falck-Zepeda, J. B.; Paarlberg, R. L.; Phillips, P. W. B.; Slamet-Loedin, I. H.; Dhugga, K. S.; Campos, H.; Gutterson, N. Genome-Edited Crops for Improved Food Security of Smallholder Farmers. Nature Genetics 2022 54:4 2022, 54 (4), 364–367. https://doi.org/10.1038/s41588-022-01046-7.

Quilichini, T.D.; Gao, P.; Yu, B.; Bing, D.; Datla, R.; Fobert, P.; Xiang, D. The Seed Coat’s Impact on Crop Performance in Pea (Pisum sativum L.). Plants 2022, 11, 2056. https://doi.org/10.3390/plants11152056.

Seidenthal, K.; Panjvani, K.; Chandnani, R.; Kochian, L.; Eramian, M. Iterative Image Segmentation of Plant Roots for High-Throughput Phenotyping. Scientific Reports 2022 12:1 2022, 12 (1), 1–21. https://doi.org/10.1038/s41598-022-19754-9.

Ubbens, J.; Feldmann, M. J.; Stavness, I.; Sharpe, A. G. Quantitative Evaluation of Nonlinear Methods for Population Structure Visualization and Inference. G3 Genes|Genomes|Genetics 2022, 12 (9). https://doi.org/10.1093/G3JOURNAL/JKAC191.

Ugochukwu, A. I.; Phillips, P. W. B. Data Sharing in Plant Phenotyping Research: Perceptions, Practices, Enablers, Barriers and Implications for Science Policy on Data Management. The Plant Phenome Journal 2022, 5 (1), e20056. https://doi.org/10.1002/PPJ2.20056.

Wang, S.; 0000-0002-0526-0843. Set-Stat-Map: Visualizing Spatial Data with Mixed Numeric and Categorical Attributes. 2023.

Wang, S.; Mondal, D.; Sadri, S.; Roy, C. K.; Famiglietti, J. S.; Schneider, K. A. SET-STAT-MAP: Extending Parallel Sets for Visualizing Mixed Data. IEEE Pacific Visualization Symposium 2022, 2022-April, 151–160. https://doi.org/10.1109/PACIFICVIS53943.2022.00024.

Yan, Y., and Ham, B.K. (2022). The Mobile Small RNAs: Important Messengers for Long-Distance Communication in Plants. Front Plant Sci 13, 2031. https://doi.org/10.3389/fpls.2022.928729.

2021

Armenta-Medina, A.; Gillmor, C. S.; Gao, P.; Mora-Macias, J.; Kochian, L. V.; Xiang, D.; Datla, R. Developmental and Genomic Architecture of Plant Embryogenesis: From Model Plant to Crops. Plant Commun 2021, 2 (1), 100136. http://doi.org/10.1016/j.xplc.2020.100136

Bekele EK, Nosworthy MG, Tyler RT, Henry CJ. Antioxidant capacity and total phenolics content of direct‐expanded chickpea–sorghum snacks. Journal of Food Processing and Preservation. 2021 May;45(5):e15439.

Bekele EK, Tyler RT, Henry CJ, House JD, Nosworthy MG. In vitro protein digestibility of direct‐expanded chickpea–sorghum snacks. Legume Science. 2021:e87.

Bose P, Mehrabi S, Mondal D. Faster multi-sided one-bend boundary labelling. InInternational Workshop on Algorithms and Computation 2021 Feb 28 (pp. 116-128).

Diddi N, Lai L, Brookbank BP, Hussain S, Nambara E, Todd C, Nourimand M, Tar’an B, Song D, Holbrook L, Doshi K. 3′-(Phenyl alkynyl) analogs of abscisic acid: synthesis and biological activity of potent ABA antagonists. Organic & biomolecular chemistry. 2021;19(13):2978-85

Espenant J, Mondal D. StreamTable: An Area Proportional Visualization for Tables with Flowing Streams. arXiv preprint arXiv:2103.15037. 2021 Mar 28.

Gao, P.; Quilichini, T. D.; Zhai, C.; Qin, L.; Nilsen, K. T.; Li, Q.; Sharpe, A. G.; Kochian, L. V.; Zou, J.; Reddy, A. S. N.; Wei, Y.; Pozniak, C.; Patterson, N.; Gillmor, C. S.; Datla, R.; Xiang, D. Alternative Splicing Dynamics and Evolutionary Divergence during Embryogenesis in Wheat Species. Plant Biotechnol. J. 2021, No. pbi.13579. https://doi.org/10.1111/pbi.13579.

Gleim, SW, Gray, RS & Smyth, SJ. 2021. Forensics at the Port: Can Diagnostic Testing Benefit Trade? Sustainability, 13, 1, 106. https://dx.doi.org/10.3390/su13010106.

Hao, Z.; Zhang, Z.; Xiang, D.; Venglat, P.; Chen, J.; Gao, P.; Datla, R.; Weijers, D. Conserved, Divergent and Heterochronic Gene Expression during Brachypodium and Arabidopsis Embryo Development. bioRxiv, 2021. https://doi.org/10.1101/2021.03.05.434107.

Khodabandehloo, H.; Roy, B.; Mondal, M.; Roy, C.; Schneider, K. 2021 IEEE International Conference on Software Analysis, Evolution and Reengineering (SANER) 2021.

Lam, K.; Gutwin, C.; Klarkowski, M.; Cockburn, A. The Effects of System Interpretation Errors on Learning New Input Mechanisms. Proceedings of the Conference on Human Factors in Computing Systems. Yokohama, Japan. ACM Press. January 15, 2021.

Mondal, M.; Roy, C.; Roy, B.; Schneider, K.  “FLeCCS: A Technique for Suggesting Fragment-Level Similar Co-change Candidates.” 2021 IEEE/ACM 29th International Conference on Program Comprehension (ICPC), 2021 pp. 160-171. doi: 10.1109/ICPC52881.2021.00024

Mondal, S., Saifullah, K., Bhattacharjee, A., Masudur Rahman, M. and Roy, C. K. 2021. Early Detection and Guidelines to Improve Unanswered Questions on Stack Overflow. In 14th Innovations in Software Engineering Conference (formerly known as India Software Engineering Conference) (ISEC 2021). Association for Computing Machinery, New York, NY, USA, Article 9, 1–11. DOI:https://doi.org/10.1145/3452383.3452392

Mondal, Saikat & Uddin, Gias & Roy, Chanchal. (2021). Rollback Edit Inconsistencies in Developer Forum. 10.1109/MSR52588.2021.00050. ArchiNet: A Concept-token based Approach for Determining Architectural Change Categories

Qi, P.; Shi, X.; Samadi, N.; Chapman, D. Bent Laue crystal anatomy: new insights into focusing and energy-dispersion properties. Journal of Applied Crystallography. 2021, 54 (2), 409-426. https://doi.org/10.1107/S1600576720016428

Saifullah, C, Asaduzzaman, M. & Roy, C. (2021). COSTER: A Tool for Finding Fully Qualified Names of API Elements in Online Code Snippets. Automatic Identification of Rollback Edit with Reasons in Stack Overflow Q&A Site

Singh KD, Duddu HS, Vail S, Parkin I, Shirtliffe SJ. UAV-Based Hyperspectral Imaging Technique to Estimate Canola (Brassica napus L.) Seedpods Maturity. Canadian Journal of Remote Sensing. 2021 Jan 2;47(1):33-47.

Tokizawa, M.; Enomoto, T.; Ito, H.; Wu, L.; Kobayashi, Y.; Mora-Macías, J.; Armenta-Medina, D.; Iuchi, S.; Kobayashi, M.; Nomoto, M.; Tada, Y.; Fujita, M.; Shinozaki, K.; Yamamoto, Y. Y.; Kochian, L. V.; Koyama, H. High Affinity Promoter Binding of STOP1 Is Essential for Early Expression of Novel Aluminum-Induced Resistance Genes GDH1 and GDH2 in Arabidopsis. J. Exp. Bot. 2021, 72 (7), 2769–2789. https://doi.org/10.1093/jxb/erab031

Vilpoux, O.F., Sharbel, T.F., Posso-Terranova, A., Hoogerheide, E.S.S. and Cereda, M.P. Use of infrared analysis to identify genetic resources from isolated producers in Brazil as a tool to improve cassava competitiveness in the starch market. Int. J. Food Sci. Technol., 2020. 56: 1354-1361. https://doi.org/10.1111/ijfs.14651

Wu, W.; Datla, R.; Ren, M. Host Autophagy Is a Shared Target of Virulence Factors of Phytophthora Infestans and Plasmodium Parasite. J. Phytopathol. (1986) 2021, 169 (5), 271–282. https://doi.org/10.1111/jph.12989

Zhang T, Cieslak M, Owens A, Wang F, Broholm SK, Teeri TH, Elomaa P, Prusinkiewicz P. Phyllotactic patterning of gerbera flower heads. Proceedings of the National Academy of Sciences. 2021 Mar 30;118(13)

2020

Ahasanuzzaman, M.; Asaduzzaman, M.; Roy, C. K.; Schneider, K. A. CAPS: A Supervised Technique for Classifying Stack Overflow Posts Concerning API Issues. Empir. Softw. Eng. 2020. https://doi.org/10.1007/s10664-019-09743-4

Aich, S.; Yamazaki, M.; Taniguchi, Y.; Stavness, I. Multi-Scale Weight Sharing Network for Image Recognition. Pattern Recognit. Lett. 2020. https://doi.org/10.1016/j.patrec.2020.01.011

Alaniz-Fabián, J.; Xiang, D.; Toro-De León, G. Del; Orozco-Nieto, A.; Gao, P.; Sharpe, A.; Kochian, L. V; Selvaraj, G.; Springer, N.; Abreu-Goodger, C.; Datla, R.; Gillmor, C. S. Maternal Genome Dominance in Early Plant Embryogenesis. bioRxiv 2020, 2020.01.14.905992. https://doi.org/10.1101/2020.01.14.905992

Alaniz-Fabián, J.; Xiang, D.; Toro-De León, G. del; Orozco-Nieto, A.; Gao, P.; Sharpe, A.; Kochian, L.; Selvaraj, G.; Springer, N.; Abreu-Goodger, C.; Datla, R.; Gillmor, C. S. Maternal Genome Dominance in Early Plant Embryogenesis. bioRxiv 2020, 2020.01.14.905992. https://doi.org/10.1101/2020.01.14.905992.

Alba, O. S.; Syrovy, L. D.; Duddu, H. S. N.; Shirtliffe, S. J. Increased Seeding Rate and Multiple Methods of Mechanical Weed Control Reduce Weed Biomass in a Poorly Competitive Organic Crop. F. Crop. Res. 2020. https://doi.org/10.1016/j.fcr.2019.107648

Awada, L., P. Phillips, & S. Smyth. 2020. The Adoption of Automated Phenotyping by Plant Breeders” in “Intelligent Image Analysis for Plant Phenotyping”, Ashok Samal (Editor), Sruti Das Choudhury (Editor), ISBN 9781138038554, CRC Press, Taylor & Francis Group

Awada, L.; Phillips, P.W.B. The distribution of returns from land efficiency improvement in multistage production systems. Canadian Journal of Agricultural Economics. November 4, 2020. https://doi.org/10.1111/cjag.12260

Ayalew, T.; Ubbens, J.; Stavness, I. Unsupervised Domain Adaptation for Plant Organ Counting. Computer Vision Problems in Plant Phenotyping Workshop. August 28, 2020.

Bandi, V.; Gutwin, C. Interactive Exploration of Genomic Conservation. Graphics Interface 2020 Conference. Toronto, Canada. CHCCS Press. May 15, 2020.

Bandi, V.; Roy, C. K.; Gutwin, C. Clone Swarm: A Cloud Based CodeClone Analysis Tool. In IWSC 2020 – Proceedings of the 2020 IEEE 14th International Workshop on Software Clones; 2020. https://doi.org/10.1109/IWSC50091.2020.9047642

Barros, V. A.; Chandnani, R.; de Sousa, S. M.; Maciel, L. S.; Tokizawa, M.; Guimaraes, C. T.; Magalhaes, J. V.; Kochian, L. V. Root Adaptation via Common Genetic Factors Conditioning Tolerance to Multiple Stresses for Crops Cultivated on Acidic Tropical Soils. Front. Plant Sci. 2020, 11, 565339. https://doi.org/10.3389/fpls.2020.565339

Bazghaleh, N.; Mamet, S.D.; Bell, J.K.; Morales Moreira, Z.; Taye, Z.M.; Williams-Johnson, S.; Arcand, M.M.; Lamb, E.G.; Shirtliffe, S.; Vail, S.; Siciliano, S.D.; Helgason, B. An intensive multilocation temporal dataset of fungal and bacterial communities in the root and rhizosphere of Brassica napus. Data in Brief. 2020, 31, 106143. https://doi.org/10.1016/j.dib.2020.106143

Bazghaleh, N.; Mamet, S.D.; Bell, J.K.; Morales Moreira, Z.; Taye, Z.M.; Williams-Johnson, S.; Arcand, M.M.; Lamb, E.G.; Shirtliffe, S.; Vail, S.; Siciliano, S.D.; Helgason, B. An intensive multilocation temporal dataset of fungal communities in the root and rhizosphere of Brassica napus. Data in Brief. 2020, 30, 105467.

Bekele EK, Nosworthy MG, Henry CJ, Shand PJ, Tyler RT. Oxidative stability of direct‐expanded chickpea–sorghum snacks. Food Science & Nutrition. 2020 Aug;8(8):4340-51.

Bell, J. K.; Siciliano, S. D.; Lamb, E. G. A Survey of Invasive Plants on Grassland Soil Microbial Communities and Ecosystem Services. Sci. Data 2020. https://doi.org/10.1038/s41597-020-0422-x

Bernard, J.; McQuillan, I. Inferring Temporal Parametric L-systems Using Cartesian Genetic Programming. 32nd International Conference on Tools with Artificial Intelligence (ICTAI). Baltimore, Md., USA. 2020, 580-588.

Bernardino, K. C.; de Menezes, C. B.; de Sousa, S. M.; Guimarães, C. T.; Carneiro, P. C. T.; Schaffert, R. E.; Kochian, L. V.; Pastina, M. M.; Magalhaes, J. V. Association Mapping and Genomic Selection for Sorghum Adaptation to Tropical Soils in a Sorghum Multiparental Random Mating Population. Theor. Appl. Genet. 2020, 1-18. https://doi.org/10.1007/s00122-020-03697-8

Bhattacharjee, A.; Nath, S. S.; Zhou, S.; Chakroborti, D.; Roy, B.; Roy, C. K.; Schneider, K. An Exploratory Study to Find Motives Behind CrossPlatform Forks from Software Heritage Dataset. In Proceedings of the 17th International Conference on Mining Software Repositories; MSR ’20; Association for Computing Machinery: New York, NY, USA, 2020; pp 11–15. https://doi.org/10.1145/3379597.3387512

Chakroborti, D.; Roy, B.; Nath, S.S. Designing for Recommending Intermediate States in A Scientific Workflow Management System. ACM Digital Library. 5, 198:1-198:29. https://doi.org/10.1145/3457145

Chaudhary, R.; Koh, C.S.; Kagale, S.; Tang, L.; Wu, S.W.; Lv, Z.; Mason, A.S.; Sharpe, A.G.; Diederichsen, A.; Parkin, I.A.P. Assessing Diversity in the Camelina Genus Provides Insights into the Genome Structure of Camelina sativa. G3: Genes, Genomes, Genetics. 2020, 10 (4), 1297-1308.

Costa, D.; Aziz, U.; Elliott, J.; Baulch, H.; Roy, B.; Schneider, K.; Pomeroy, J. The Nutrient App: Developing a smartphone application for on-site instantaneous community-based NO3 and PO4 monitoring. Environmental Modelling & Software. 2020, 133, 104829. https://doi.org/10.1016/j.envsoft.2020.104829

David E, Madec S, Sadeghi-Tehran P, Aasen H, Zheng B, Liu S, Kirchgessner N, Ishikawa G, Nagasawa K, Badhon MA, Pozniak C. Global Wheat Head Detection (GWHD) dataset: a large and diverse dataset of high-resolution RGB-labelled images to develop and benchmark wheat head detection methods. Plant Phenomics. 2020 Aug 20.

Fourmaux, S.; Hallin, E.; Chaulagain, U.; Weber, S.; Kieffer, J. C. Laser-Based Synchrotron X-Ray Radiation Experimental Scaling. Opt. Express 2020, 28 (3), 3147–3158. https://doi.org/10.1364/OE.383818

Fourmaux, S.; Hallin, E.; Chaulagain, U.; Weber, S.; Kieffer, J. C. Laser-Based Synchrotron X-Ray Radiation Experimental Scaling. Opt. Express 2020, 28 (3), 3147. https://doi.org/10.1364/oe.383818.

Fourmaux, S.; Hallin, E.; Krol, A.; Bourgade, J. L.; Kieffer, J. C. X-Ray Phase Contrast Imaging of Spherical Capsules. Opt. Express 2020, 28 (9), 13978–13990. https://doi.org/10.1364/OE.386618

Fourmaux, S.; Hallin, E.L.; Krol, A.; Bourgade, J.L.; Kieffer, J.C. X-ray phase contrast Imaging of spherical capsules. Optics Express, 28(9), 13978-13990

Gleim, S.; Lubieniechi, S.; Smyth, S. J. CRISPR-Cas9 Application in Canadian Public and Private Plant Breeding. CRISPR Journal. 2020. https://doi.org/10.1089/crispr.2019.0061

Gleim, SW, Gray, RS & Smyth, SJ. 2021. Forensics at the Port: Can Diagnostic Testing Benefit Trade? Sustainability, 13, 1, 106. https://dx.doi.org/10.3390/su13010106.

Gutwin, C.; van der Kamp, M.; Storring, J.; Cockburn, A.; Phillips, C. Testing the Limits of the Spatial Approach: Comparing Retrieval and Revisitation Performance of Spatial and Paged Data Organizations for Large Item Sets. Proceedings of Graphics Interface 2020. Toronto, Canada. CHCCS Press. May 15, 2020.

Habibullah, M.; Mohebian, M.R.; Soolanayakanahally, R.; Bahar, A.N.; Vail, S.; Wahid, K.A.; Dinh, A. 2020. Low-Cost Multispectral Sensor Array for Determining Leaf Nitrogen Status. Nitrogen. 1, 1, 67-80. MDPI. doi: 10.3390/nitrogen1010007

Halcro, K.; McNabb, K.; Lockinger, A.; Socquet-Juglard, D.; Bett, K.; Noble, S. The BELT and phenoSEED platforms: shape and colour phenotyping of seed samples. Plant Methods. 2020, 16, 49. https://doi.org/10.1186/s13007-020-00591-8

Hasan MR, Mondal D, Gutwin C. Tracing shapes with eyes: design and evaluation of an eye tracking based approach. InProceedings of the 11th Augmented Human International Conference 2020 May 27 (pp. 1-4)

Hossain, M.M.; Roy, B.; Roy, C.K.; Schneider, K.A. VizSciFlow: A Visually Guided Scripting Framework for Supporting Complex Scientific Data Analysis. Journal of Proceedings of the ACM on Human-Computer Interaction. 2020, 4, 34 pages.

Hussain, S.; Brookbank, B. P.; Nambara, E. Hydrolysis of Abscisic Acid Glucose Ester Occurs Locally and Quickly in Response to Dehydration. J. Exp. Bot. 2020. https://doi.org/10.1093/jxb/eraa026

Kazachkov, M.; Li, Q.; Shen, W.; Wang, L.; Gao, P.; Xiang, D.; Datla, R.; Zou, J. Molecular Identification and Functional Characterization of a Cyanogenic Glucosyltransferase from Flax (Linum Unsitatissimum). PLoS One 2020, 15 (2), e0227840. https://doi.org/10.1371/journal.pone.0227840.

Kazachkov, M.; Li, Q.; Shen, W.; Wang, L.; Gao, P.; Xiang, D.; Datla, R.; Zou, J. Molecular Identification and Functional Characterization of a Cyanogenic Glucosyltransferase from Flax (Linum Unsitatissimum). PLoS One 2020. https://doi.org/10.1371/journal.pone.0227840

Khaled Saifullah, C. M.; Asaduzzaman, M.; Roy, C. K. Exploring Type Inference Techniques of Dynamically Typed Languages. In SANER 2020 – Proceedings of the 2020 IEEE 27th International Conference on Software Analysis, Evolution, and Reengineering; 2020. https://doi.org/10.1109/SANER48275.2020.9054814

Khan, N; You, F.; Datla, R.; Ravichandran, S.; Jia, B.; Cloutier, S. Genome-wide Identification of ATP Binding Cassette (ABC) Transporter and Heavy Metal Associated (HMA) Gene Families in Flax (Linum usitatissimum L.). BMC Genomics 2020, 21 (1), 722. https://doi.org/10.1186/s12864-020-07121-9.

Khan, N. A.; Lyon, O. A. S.; Eramian, M.; McQuillan, I. A Novel Technique Combining Image Processing, Plant Development Properties, and the Hungarian Algorithm, to Improve Leaf Detection in Maize. 2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), Seattle, WA, USA. 2020, 330-339. doi: 10.1109/CVPRW50498.2020.00045.

Khan, N.; Stavness, I. Pruning Convolutional Filters Using Batch Bridgeout. IEEE Access. 8, 212003-212012. IEEE. 10.1109/ACCESS.2020.3040256

Kim, Y.-H.; Pass, B.; Schneider, D. J. Optimal Transport and Barycenters for Dendritic Measures. Pure Appl. Analysis 2020, 2 (3), 581–601. https://doi.org/10.2140/paa.2020.2.581

Lalany, F.; Arcand, M. M. Alteration of the Phenylpropanoid Pathway through Breeding of Zero-Tannin Lentil Modifies Rhizosphere Microbial Communities and Carbon Cycling Processes. Rhizosphere 2020. https://doi.org/10.1016/j.rhisph.2019.100183

Lassoued, R.; Macall, D.; Smyth, S.J.; Phillips, P.W.B.; Hesseln, H. How should we regulate products of new breeding techniques? Opinion of surveyed experts in plant biotechnology. Biotechnology Reports. 2020, 26, e00460.

Li, G.; Wu, Y.; Roy, C. K.; Sun, J.; Peng, X.; Zhan, N.; Hu, B.; Ma, J. SAGA: Efficient and Large-Scale Detection of Near-Miss Clones with GPU Acceleration. In SANER 2020 – Proceedings of the 2020 IEEE 27th International Conference on Software Analysis, Evolution, and Reengineering; 2020. https://doi.org/10.1109/SANER48275.2020.9054832

Liu, N.; Zhao, L.; Tang, L.; Stobbs, J.; Parkin, I.; Kunst, L.; Karunakaran, C. Mid-Infrared Spectroscopy Is a Fast Screening Method for Selecting Arabidopsis Genotypes with Altered Leaf Cuticular Wax. Plant Cell Environ. 2020. https://doi.org/10.1111/pce.13691

Macall, D. M.; Smyth, S. J. Ex-Ante Impact Assessment of GM Maize Adoption in El Salvador. GM Crop. Food 2020. https://doi.org/10.1080/21645698.2019.1706424

Mairena, A.; Gutwin, C.; Dechant, M.; Cockburn, A. A Baseline Study of Emphasis Effects in Information Visualization. Proceedings of Graphics Interface 2020. Toronto, Canada, CHCCS Press. May 15, 2020.

Mondal, M., Roy, C. & Schneider, Kevin. (2020). A Fine-Grained Analysis on the Inconsistent Changes in Code Clones. 2020 IEEE International Conference on Software Maintenance and Evolution (ICSME). 220-231. 10.1109/ICSME46990.2020.00030.

Mondal, M.; Roy, B.; Roy, C. K.; Schneider, K. A. Associating Code Clones with Association Rules for Change Impact Analysis. In SANER 2020 – Proceedings of the 2020 IEEE 27th International Conference on Software Analysis, Evolution, and Reengineering; 2020. https://doi.org/10.1109/SANER48275.2020.9054846

Mondal, M.; Roy, B.; Roy, C. K.; Schneider, K. A. HistoRank: History-Based Ranking of Co-Change Candidates. In SANER 2020 – Proceedings of the 2020 IEEE 27th International Conference on Software Analysis, Evolution, and Reengineering; 2020. https://doi.org/10.1109/SANER48275.2020.9054869

Mondal, M.; Roy, B.; Roy, C.K.; Schneider, K.A. ID-correspondence: A Measure for Detecting Evolutionary Coupling. Empirical Software Engineering Journal. 26, 1-34. https://link.springer.com/article/10.1007/s10664-020-09921-9

Mondal, M.; Roy, C. K.; Roy, B.; Schneider, K. A. Investigating the Relationship between Evolutionary Coupling and Software BugProneness. In CASCON 2019 Proceedings – Conference of the Centre for Advanced Studies on Collaborative Research – Proceedings of the 29th Annual International Conference on Computer Science and Software Engineering; 2020.

Mondal, M.; Roy, C. K.; Roy, B.; Schneider, K. A. Ranking Co-Change Candidates of Micro-Clones. In CASCON 2019 Proceedings – Conference of the Centre for Advanced Studies on Collaborative Research – Proceedings of the 29th Annual International Conference on Computer Science and Software Engineering; 2020.

Mondal, M.; Roy, C. K.; Schneider, K. A. A Survey on Clone Refactoring and Tracking. J. Syst. Softw. 2020. https://doi.org/10.1016/j.jss.2019.110429

Mondal, M.;Roy, B.; Roy, C.K.; Schneider, K.A. Investigating Near-Miss Micro-Clones in Evolving Software. Proceedings of the 28th ACM/IEEE International Conference on Program Comprehension (ICPC 2020). Seoul, South Korea. 2020, 11 pages.

Mostaeen, G.; Roy, B.; Roy, C.K.; Schneider, K.; Svajlenko, J. A machine learning based framework for code clone validation. Journal of Systems and Software. 2020, 169, 110686. https://doi.org/10.1016/j.jss.2020.110686

Murmu, J.; Allard, G.; Chabot, D.; Nambara, E.; Datla, R.; Hepworth, S.; Subramaniam, R.; Singh, J. The Arabidopsis Gene RGO Mediates Cytokinin Responses and Increases Seed Yield. bioRxiv 2020, 2020.02.06.937342. https://doi.org/10.1101/2020.02.06.937342

Nadim, M.; Mondal, M.; Roy, C. K. Evaluating Performance of Clone Detection Tools in Detecting Cloned Cochange Candidates. In 2020 IEEE 14th International Workshop on Software Clones (IWSC); 2020; pp 15–21. https://doi.org/10.1109/IWSC50091.2020.9047639

Nafi, K. W.; Roy, B.; Roy, C. K.; Schneider, K. A. A Universal Cross Language Software Similarity Detector for Open Source Software Categorization. J. Syst. Softw. 2020. https://doi.org/10.1016/j.jss.2019.110491

Nakano, Y.; Kusunoki, K.; Maruyama, H.; Enomoto, T.; Tokizawa, M.; Iuchi, S.; Kobayashi, M.; Kochian, L. V.; Koyama, H.; Kobayashi, Y. A Single‐population GWAS Identified AtMATE Expression Level Polymorphism Caused by Promoter Variants Is Associated with Variation in Aluminum Tolerance in a Local Arabidopsis Population. Plant Direct 2020, 4 (8). https://doi.org/10.1002/pld3.250.

Nielsen, K. Using UAV-Based Imagery to Determine Volume, Groundcover, and Growth Rate Characteristics of Lentil (Lens culinaris Medik.). M.Sc. Thesis, University of Saskatchewan. 2020.

Nilsen, K. T.; Walkowiak, S.; Xiang, D.; Gao, P.; Quilichini, T. D.; Willick, I. R.; Byrns, B.; N’Diaye, A.; Ens, J.; Wiebe, K.; Ruan, Y.; Cuthbert, R. D.; Craze, M.; Wallington, E. J.; Simmonds, J.; Uauy, C.; Datla, R.; Pozniak, C. J. Copy Number Variation of TdDof Controls Solid-Stemmed Architecture in Wheat. Proc. Natl. Acad. Sci. U. S. A. 2020, 117 (46), 28708–28718. https://doi.org/10.1073/pnas.2009418117

Nilsen, K. T.; Walkowiak, S.; Xiang, D.; Gao, P.; Quilichini, T. D.; Willick, I. R.; Byrns, B.; N’Diaye, A.; Ens, J.; Wiebe, K.; Ruan, Y.; Cuthbert, R. D.; Craze, M.; Wallington, E. J.; Simmonds, J.; Uauy, C.; Datla, R.; Pozniak, C. J. Copy Number Variation of TdDof Controls Solid-Stemmed Architecture in Wheat. Proceedings of the National Academy of Sciences 2020, 202009418.

Pass, B.; Kim, Y.-H.; Schneider, D. Optimal Transport and Barycenters for Dendritic Measures. Pure Appl. Anal. 2020.

Pellino, M.; Hojsgaard, D.; Hörandl, E.; Sharbel, T.F. Chasing the Apomictic Factors in the Ranunculus auricomus Complex: Exploring Gene Expression Patterns in Microdissected Sexual and Apomictic Ovules. Genes 2020, 11, 728. https://doi.org/10.3390/genes11070728

Perumal S, Koh CS, Jin L, Buchwaldt M, Higgins EE, Zheng C, Sankoff D, Robinson SJ, Kagale S, Navabi ZK, Tang L. A high-contiguity Brassica nigra genome localizes active centromeres and defines the ancestral Brassica genome. Nature plants. 2020 Aug;6(8):929-41.

Qi P, Samadi N, Chapman D. X-ray Spectral Imaging Program: XSIP. Journal of Synchrotron Radiation. 2020 Nov 1; 27(6).

Qin, L.; Zhou, Z.; Li, Q.; Zhai, C.; Liu, L.; Quilichini, T. D.; Gao, P.; Kessler, S. A.; Jaillais, Y.; Datla, R.; Peng, G.; Xiang, D.; Wei, Y. Specific Recruitment of Phosphoinositide Species to the Plant-Pathogen Interfacial Membrane Underlies Arabidopsis Susceptibility to Fungal Infection. Plant Cell 2020, 32 (5), 1665–1688. https://doi.org/10.1105/tpc.19.00970.

Qin, L.; Zhou, Z.; Li, Q.; Zhai, C.; Liu, L.; Quilichini, T.; Gao, P.; Kessler, S.; Jaillais, Y.; Datla, R.; Peng, G.; Xiang, D.; Wei, Y. Specific Recruitment Of Phosphoinositide Species To The Plant-Pathogen Interfacial Membrane Underlies Arabidopsis Susceptibility To Fungal Infection. The Plant Cell 2020, 32 (5), 1665-1688.

Siegmund, J.; Roy, C.K. Preface to the special issue on program comprehension. Empir Software Eng. 2020, 25, 3, 2137–2139. https://doi.org/10.1007/s10664-020-09806-x

Siri, J.N.; Parkin, I.; Sharpe, A. Using Simulated Annealing to Declutter Genome Visualizations. Proceeding of the Thirty-Third International FLAIRS Conference. 2020, 201-204.

Smyth, S. J. The Human Health Benefits from GM Crops. Plant Biotechnol. J. 2020. https://doi.org/10.1111/pbi.13261

Smyth, S. J.; Macall, D. M.; Phillips, P. W. B.; de Beer, J. Implications of Biological Information Digitization: Access and Benefit Sharing of Plant Genetic Resources. J. World Intellect. Prop. 2020. https://doi.org/10.1111/jwip.12151

Smyth, S.J.; Sutherland, C. Assessing Innovative Sustainability. Report submitted to the Agri-Food Innovation Council. May 2020.

Smyth, SJ, & Charles, TC. 2020. Impacts on International Research Collaborations from DSI/ABS Uncertainty. Trends in Biotechnology, https://doi.org/10.1016/j.tibtech.2020.10.011

Smyth, SJ, Gleim, SW & Lubieniechi, S. 2020. Regulatory Barriers to Innovative Plant Breeding in Canada. Frontiers in Genome Editing, 2,

Smyth, SJ. 2020. Regulatory Barriers to Improving Global Food Security. Global Food Security, 26, Article 100440. https://doi.org/10.1016/j.gfs.2020.100440.

Sun, L.; Zhang, M.; Liu, X.; Mao, Q.; Shi, C.; Kochian, L. V.; Liao, H. Aluminum is Essential for Root Growth and Development of Tea Plants (Camellia sinensis). J. Integr. Plant Biol. 2020, 62 (7), 984–997. https://doi.org/10.1111/jipb.12942.

Sutherland, C; Sim, C.;Gleim, S.; Smyth, S.J. Canadian Consumer Insights on Agriculture: Addressing the Knowledge-Gap. J Agr Food Inform. 2020, 21, 50-72.

Sutherland, C.; Sim, C.; Gleim, S.; Smyth, S. J. Consumer Insights on Canada’s Food Safety and Food Risk Assessment System. J. Agric. Food Res. 2020. https://doi.org/10.1016/j.jafr.2020.100038

Tasim, J.; Mondal, D. Data Reduction and Deep-Learning Based Recovery for Geospatial Visualization and Satellite Imagery. IEEE International Conference on Big Data (IEEE BigData-MLBD 2020). 2020. 10.1109/BigData50022.2020.9378008

Taye, Z. M.; Helgason, B. L.; Bell, J. K.; Norris, C. E.; Vail, S.; Robinson, S. J.; Parkin, I. A. P.; Arcand, M.; Mamet, S.; Links, M. G.; Dowhy, T.; Siciliano, S.; Lamb, E. G. Core and Differentially Abundant Bacterial Taxa in the Rhizosphere of Field Grown Brassica Napus Genotypes: Implications for Canola Breeding. Front. Microbiol. 2020. https://doi.org/10.3389/fmicb.2019.03007

Tidemann, B. D.; Harker, K. N.; Johnson, E. N.; Willenborg, C. J.; Shirtliffe, S. J. Time of Wild Oat (Avena Fatua) Panicle Clipping Influences Seed Viability. Weed Sci. 2020. https://doi.org/10.1017/wsc.2020.19

Torres-Tello, J.; Venkatachalam, S.; Moreno, L.; Ko, S.-B. Ensemble Learning for Improving Generalization in Aeroponics Yield Prediction. 2020 IEEE International Symposium on Circuits and Systems (ISCAS). Sevilla, Spain. 2020. 10.1109/ISCAS45731.2020.9181283

Ubbens, J.; Cieslak, M.; Prusinkiewicz, P.; Parkin, I.; Ebersbach, J.; Stavness, I. Latent Space Phenotyping: Automatic Image-Based Phenotyping for Treatment Studies. Plant Phenomics 2020. https://doi.org/10.34133/2020/5801869

Ubbens, J.R.; Ayalew, T.W.; Shirtliffe, S.; Josuttes, A.; Pozniak, C.; Stavness, I. Auto Count: Unsupervised Segmentation and Counting of Organs in Field Images. European Conference on Computer Vision 2020. August 23, 2020. Virtual Conference.

Walkowiak, S.; Gao, L.; Monat, C.; Haberer, G.; Kassa, M.T.; Brinton, J.; Ramirez-Gonzalez, R.H.; Kolodziej, M.C.; Delorean, E.; Thambugala, D.; Klymiuk, V.; Byrns, B.; Gundlach, H.; Bandi, V.; Siri, J.N.; Nilsen, K.; Aquino, C.; Himmelbach, A.; Copetti, D.; Ban, T.; Venturini, L.; Bevan, M.; Clavijo, B.; Koo, D.-H.; Ens, J.; Wiebe, K.; N’Diaye, A.; Fritz, A.K.; Gutwin, C.; Fiebig, A.; Fosker, C.; Fu, B.X.; Accinelli, G.G.; Gardner, K.A.; Fradgley, N.; Gutierrez-Gonzalez, J.; Halstead-Nussloch, G.; Hatakeyama, M.; Koh, C.S.; Deek, J.; Costamagna, A.C.; Fobert, P.; Heavens, D.; Kanamori, H.; Kawaura, K.; Kobayashi, F.; Krasileva, K.; Kuo, T.; McKenzie, N.; Murata, K.; Nabeka, Y.; Paape, T.; Padmarasu, S.; Percival-Alwyn, L.; Kagale, S.; Scholz, U.; Sese, J.; Juliana, P.; Singh, R.; Shimizu-Inatsugi, R.; Swarbreck, D.; Cockram, J.; Budak, H.; Tameshige, T.; Tanaka, T.; Tsuji, H.; Wright, J; Wu, J.; Steuernagel, B.; Small, I.; Cloutier, S.; Keeble-Gagnère, G.; Muehlbauer, G.; Tibbets, J.; Nasuda, S.; Melonek, J.; Hucl, P.J.; Sharpe, A.G.; Clark, M; Legg, E.; Bharti, A.; Langridge, P.; Hall, A.; Uauy, C.; Mascher, M.; Krattinger, S.G.; Handa, H.; Shimizu, K.K.; Distelfeld, A.; Chalmers, K.; Keller, B.; Mayer, K.F.X.; Poland, J.; Stein, N.; McCartney, C.A.; Spannagl, M.; Wicker, T.; Pozniak, C.J. Multiple wheat genomes reveal global variation in modern breeding. Nature. 588, 277-283. Springer Nature. https://doi.org/10.1038/s41586-020-2961-x

Webb, S.R., Twyman, R.M. & Moloney, M. Agtech infrastructure for pandemic preparedness. Nat Biotechnol 38, 1025–1027 (2020). https://doi.org/10.1038/s41587-020-0654-5

Wu, M.; Wang, P.; Yin, K.; Cheng, H.; Xu, Y.; Roy, C. K. LVMapper: A LargeVariance Clone Detector Using Sequencing Alignment Approach. IEEE Access 2020. https://doi.org/10.1109/ACCESS.2020.2971545

Yan, Y.; Ham, B. K.; Chong, Y. H.; Yeh, S. D.; Lucas, W. J. A Plant SMALL RNA-BINDING PROTEIN 1 Family Mediates Cell-to-Cell Trafficking of RNAi Signals. Mol. Plant 2020, 13 (2), 321–335. https://doi.org/10.1016/j.molp.2019.12.001.

Yan, Y.; Ham, B. K.; Chong, Y. H.; Yeh, S. D.; Lucas, W. J. A Plant SMALL RNA-BINDING PROTEIN 1 Family Mediates Cell-to-Cell Trafficking of RNAi Signals. Mol. Plant 2020. https://doi.org/10.1016/j.molp.2019.12.001

2019

Bamrah, R. K.; Vijayan, P.; Karunakaran, C.; Muir, D.; Hallin, E.; Stobbs, J.; Goetz, B.; Nickerson, M.; Tanino, K.; Warkentin, T. D. Evaluation of X-Ray Fluorescence Spectroscopy as a Tool for Nutrient Analysis of Pea Seeds. Crop Sci. 2019, 59 (6), 2689–2700. https://doi.org/10.2135/cropsci2019.01.0004.

Cui, X.; Balcerzak, M.; Schernthaner, J.; Babic, V.; Datla, R.; Brauer, E. K.; Labbé, N.; Subramaniam, R.; Ouellet, T. An Optimised CRISPR/Cas9 Protocol to Create Targeted Mutations in Homoeologous Genes and an Efficient Genotyping Protocol to Identify Edited Events in Wheat. Plant Methods 2019, 15 (1), 119. https://doi.org/10.1186/s13007-019-0500-2.

Fourmaux, S.; Kieffer, J.-C.; Hallin, E. Scaling LWFA-Based Betatron Emission to the 1PW Level. In Relativistic Plasma Waves and Particle Beams as Coherent and Incoherent Radiation Sources III; Jaroszynski, D. A., Hur, M., Eds.; SPIE, 2019; Vol. 11036, p 12. https://doi.org/10.1117/12.2523395.

Griffiths, J. S.; Datla, R. S. S. Genetic Potential and Gene Expression Landscape in Flax; Springer, Cham, 2019; pp 119–128. https://doi.org/10.1007/978-3-030-23964-0_8.

Millar, C.; Pratt, D.; Schneider, D. J.; Koehler, G.; McDonnell, J. J. Further Experiments Comparing Direct Vapor Equilibration and Cryogenic Vacuum Distillation for Plant Water Stable Isotope Analysis. Rapid Commun. Mass Spectrom. 2019, 33 (23), 1850–1854. https://doi.org/10.1002/rcm.8530.

Mondal, M.; Roy, C. K.; Roy, B.; Schneider, K. A. Investigating the Relationship between Evolutionary Coupling and Software BugProneness. In CASCON 2019 Proceedings – Conference of the Centre for Advanced Studies on Collaborative Research – Proceedings of the 29th Annual International Conference on Computer Science and Software Engineering; 2020.

Mondal, M.; Roy, C. K.; Roy, B.; Schneider, K. A. Ranking Co-Change Candidates of Micro-Clones. In CASCON 2019 Proceedings – Conference of the Centre for Advanced Studies on Collaborative Research – Proceedings of the 29th Annual International Conference on Computer Science and Software Engineering; 2020.

Mondal, M.; Roy, C. K.; Schneider, K. A. A Survey on Clone Refactoring and Tracking. J. Syst. Softw. 2020. https://doi.org/10.1016/j.jss.2019.110429

Pandey, P. K.; Quilichini, T. D.; Vaid, N.; Gao, P.; Xiang, D.; Datla, R. Versatile and Multifaceted CRISPR/Cas Gene Editing Tool for Plant Research. Semin. Cell Dev. Biol. Elsevier Ltd December 1, 2019, pp 107–114. https://doi.org/10.1016/j.semcdb.2019.04.012.

Xiang, D.; Quilichini, T. D.; Liu, Z.; Gao, P.; Pan, Y.; Li, Q.; Nilsen, K. T.; Venglat, P.; Esteban, E.; Pasha, A.; Wang, Y.; Wen, R.; Zhang, Z.; Hao, Z.; Wang, E.; Wei, Y.; Cuthbert, R.; Kochian, L. V.; Sharpe, A.; Provart, N.; Weijers, D.; Gillmor, C. S.; Pozniak, C.; Datla, R. The Transcriptional Landscape of Polyploid Wheats and Their Diploid Ancestors during Embryogenesis and Grain Development[OPEN]. Plant Cell 2019, 31 (12), 2888–2911. https://doi.org/10.1105/tpc.19.00397.

Xu, J. M.; Wang, Z. Q.; Wang, J. Y.; Li, P. F.; Jin, J. F.; Chen, W. W.; Fan, W.; Kochian, L. V.; Zheng, S. J.; Yang, J. L. Low Phosphate Represses Histone Deacetylase Complex1 to Regulate Root System Architecture Remodeling in Arabidopsis. New Phytol 2019, 225 (4),1732-1745. https://doi-org.cyber.usask.ca/10.1111/nph.16264

Singh, K. D.; Shirtliffe, S. J.; Duddu, H. S. N. The Role of Bi-Directional Reflectance Correction in UAV-Based Hyperspectral Imaging to Improve Data Robustness. In 2019 10th Workshop on Hyperspectral Imaging and Signal Processing: Evolution in Remote Sensing (WHISPERS); IEEE, 2019. Article

Bernardino KC, et al. (2019) The genetic architecture of phosphorus efficiency in sorghum involved pleiotropic QTL for root morphology and grain yield under low phosphorus availability in the soil. BMC Plant Biology 19: 87. GIFS Researcher: Leon V. Kochian. Article

Duszynska D, et al. (2019) Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids. Plant Reproduction 32(3): 275-289. doi.org/10.1007/s00497-019-00369-6 GIFS Researcher: Timothy Sharbel. Article

Hodač L, et al. (2019) A little bit of sex prevents mutation accumulation even in apomictic polyploid plants. BMC Evolutionary Biology 19:170 doi.org/10.1186/s12862-019-1495-z GIFS Researcher: Timothy Sharbel. Article

Hodač L, et al. (2019) A little bit of sex prevents mutation accumulation even in apomictic polyploid plants. BMC Evolutionary Biology 19:170 doi.org/10.1186/s12862-019-1495-z GIFS Researcher: Timothy Sharbel. Article

Fourmaux S, Hallin E, Chaulagain U, Weber S, Kieffer JC (2020) Laser-based sunchrotron X-ray radiation experimental scaling. Optics Express 28(3): 3147-3158. doi.org/10.1364/OE.383818. Article

Fourmaux S, Hallin E, Arnison PG, Kieffer JC (2019) Optimization of laser-based synchrotron X-ray for plant imaging. Applied Physics B 125(3):34. doi.org/10.1007/s00340-019-7144-9. Article

Fourmaux S, et al. (2019) Radiation generation via non-linear optical processes during propagation of high peak and high average power fs pulses. doi.org/10.1117/12.2515880. GIFS Researchers: Emil HallinArticle

Melo J, et al. (2019) Repeat variants for the SbMATE transporter protect sorghum roots from aluminum toxicity by transcriptional interplay in cis and trans. Proc Natl Acad Sci USA 116(1):313. doi:10.1073/pnas. 18084001115. GIFS Researcher: Leon V. KochianArticle

Navarro-Dominguez B, et al. (2019) Gene expression changes elicited by a parasitic B chromosome in the grasshopper Eyprepocnemis plorans are consistent with its phenotypic effects. Chromosoma 128(1):53–67. doi:10.1007/s00412-018-00689-y. GIFS Researcher: Timothy Sharbel. Article

Rizzo P, et al. (2019) Discovery of key regulators of dark gland development and hypericin biosynthesis in St. John’s Wort (Hypericum perforatum). Plant Biotechnology Journal doi: 10.1111/pbi.13141. GIFS Researcher: Timothy Sharbel. Article

Samaniego M, Espana C, Deters R (2019) Access Control Management for Plant Phenotyping Using Integrated Blockchain. Proceedings of the 2019 ACM International Symposium on Blockchain and Secure Critical Infrastructure. BSCI pp 39-46 Article

Qin L, et al. (2019) Adaption of Roots to Nitrogen Deficiency Revealed by 3D Quantification and Proteomic Analysis. Plant Physiol 179(1):329. doi: 10.1104/pp.18.00716. GIFS Researcher: Leon V. Kochian. Article

Qiu W (2019) AhFRDL1 mediated citrate secretion contributes to adaptations of peanuts for Fe deficiency and A1 stress. Journal of Experimental Botany 70: 2873-2886. GIFS Researchers: Leon V. Kochian. Article

Xiang D, et al. (2019) The Transcriptional Landscape of Polyploid Wheats and their Diploid Ancestors during Embryogenesis and Grain Development. The Plant Cell  31(12):2888-2911. GIFS Researchers: Raju Datla (Senior Author) / Leon V. Kochian. Article

Zhang Z, et al. (2019) Plant lncRNAs are enriched in and move systemically through the phloem in response to phosphate deficiency. Journal of Integrative Plant Biology 61(4):492–508. doi: 10.1111/jipb.12715. GIFS Researcher: Brian Ham. Article

2018

Alvarado, Washington, Natcher D (2018) Living Together: Communities and Protected Areas in Chile. National Forestry Service Management of Forest Promotion and Development Department of Ecosystems and Society.(in press) GIFS Affiliates: David Natcher.

Appels R, et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science 361(6403) doi: 10.1126/science.aar719. GIFS Affiliates: Curtis Pozniak & Andrew Sharpe Article. 

Ashnest JR, Gendall AR (2018) Trafficking to the seed protein storage vacuole. Functional Plant Biol 45(9):895–910. doi:10.1071/FP17318. Article

Chen W, et al. (2018) LeSPL-CNR negatively regulates Cd acquisition through repressing nitrate reductase-mediated nitric oxide production in tomato. Planta 248(4):893–907. doi:10.1007/s00425-018-2949-z. GIFS Researcher: Leon V. Kochian.

Chen, Angel, Natcher D (2018) Greening Canada’s Arctic Food System: Local Strategies for Combating Food Insecurity. Canadian Food Studies. GIFS Affiliates: David Natcher. (in press)

Dragwidge JM, Ford BA, Ashnest JR, Das P, Gendall AR (2018) Two Endosomal NHX-Type Na+/H+ Antiporters are Involved in Auxin-Mediated Development in Arabidopsis thaliana. Plant and Cell Physiology 59(8):1660–1669. doi:10.1093/pcp/pcy090. Article  

Fourmaux S, Kieffer JC, Hallin E (2018) Laser wakefield driven x-ray sources in Canada: a brilliant future for agriculture and global food security. doi:10.1117/12.2319887. Article 

Hufnagel B, et al. (2018) Exploiting sorghum genetic diversity for enhanced aluminum tolerance: Allele mining based on the AltSB locus. Scientific Reports 8(1):10094. doi: 10.1038/s41598-018-27817-z. GIFS Researcher: Leon V. KochianArticle  

Ghaith, Ziad, Natcher D, Kulshreshtha S (2018) Economic Impact of the United States withdrawal from Trans-Pacific Partnership on Canada: A Computable General Equilibrium Based Analysis. Journal of Applied Business and Economics20(8). doi:10.33423/jabe.v20i8.213. GIFS Affiliate Researcher: David Natcher. Article

Liu MY, et al. (2018) Two citrate transporters coordinately regulate citrate secretion from rice bean root tip under aluminum stress. Plant, Cell & Environment 41(4):809–822. doi: 10.1111/pce.13150. GIFS Researcher: Leon V. Kochian. Article

Kieffer JC, Fourmaux S, Hallin E (2018) High peak power lasers at INRS and applications of laser-wakefield-based x-ray sources to global food security. High-Brightness Sources and Light-Driven Interactions, OSA Technical Digest (online). (Optical Society of America), p HM3A.2. doi:10.1117/12.2515880. Article 

Minielly C, Peak D, Natcher D, Zeng W (2018) Scaling Up Research Using GIS and WebGIS Spatial Tools: Case Study of MicroVeg Project. Acta Horticulturae. GIFS Affiliate Researcher: David Natcher. (in press) Article.

Magalhaes JV, Piñeros MA, Maciel LS, Kochian LV (2018) Emerging Pleiotropic Mechanisms Underlying Aluminum Resistance and Phosphorus Acquisition on Acidic Soils. Frontiers in Plant Science 9:1420. doi: 10.3389/fpls.2018.01420. Article

Ma X, Mau M, Sharbel TF (2018) Genome Editing for Global Food Security. Trends in Biotechnology 36(2):123–127. doi:10.1016/j.tibtech.2017.08.004. Article

Natcher D (2018) Rethinking Canada’s Northern Food Systems: A Basis for Achieving Zero Hunger. The Circle:16–17. GIFS Affiliate Researcher: David Natcher. Article.

Natcher D, et al. (2018) Transitions in Cooperative Labour and the Constraints to the Adoption and Scaling-Up of Labour Intensive Agricultural Technologies. Sustainable Agriculture Research:71–80. GIFS Affiliate Researcher: David Natcher. Article.

Natcher D (2018) . Subsistence, Regional Planning, and the Cultural Carrying Capacity of First Nations in Alberta, Canada. Hunter Gatherer Research. doi:https://doi.org/10.3828/hgr.2017.36. GIFS Affiliate Researcher: David Natcher. Article.

Natcher D, Kalagnanam V, Rawal R, Johnston M, Mamun AA (2018) Non-timber forest products and village livelihoods in Rajasthan, India: adaptation in a changing environment. International Journal of Sustainable Development & World Ecology25(1):47–55. doi: 10.1080/13504509.2017.1304462. Article.

Parlee B, Sandlos J, Natcher D (2018) Undermining Subsistence: Barren-ground Caribou in a ‘Tragedy of Open Access.” Science Advances. GIFS Affiliate Researcher: David Natcher. Article

Ramírez-González RH, et al. (2018) The transcriptional landscape of polyploid wheat. Science 361(6403). doi: 10.1126/science.aar6089. GIFS Affiliates: Curtis Pozniak & Andrew Sharpe. Article

Rojek J, et al. (2018) Establishing the cell biology of apomictic reproduction in diploid Boechera stricta (Brassicaceae). Annals of Botany 122(4):513–539. doi:10.1093/aob/mcy1140. GIFS Researcher: Timothy Sharbel. Article

Song H, et al. (2018) Robust and User Friendly 3D Re-Construction of Neutron Tomographic Images. 2018 IEEE Winter Conference on Applications of Computer Vision (WACV), pp 930–938. GIFS Researcher: Emil Hallin.

Southcott C, Natcher D (2018) Extractive industries and Indigenous subsistence economies: a complex and unresolved relationship. Canadian Journal of Development Studies / Revue canadienne détudes du développement39(1):137–154. https://doi.org/10.1080/02255189.2017.1400955 .GIFS Affiliate Researcher: David NatcherArticle.

Southcott C, Abele F, Natcher DC, Parlee B (2018) Resources and sustainable development in the Arctic(Routledge Press, New York). GIFS Affiliate Researcher: David Natcher.

Uga Y, et al. (2018) Genomic regions responsible for seminal and crown root lengths identified by 2D & 3D root system image analysis. BMC Genomics 19(1):273. doi: 10.1186/s12864-018-4639-4. GIFS Researcher: Leon V. Kochian. Article

Wenzel, George, Natcher D (2018) Reflections on Inuit and Subsistence in the 21st Century. Hunter Gatherer Research 3. GIFS Affiliate Researcher: David Natcher

2017

Arbelaez JD, et al. (2017) Aluminum Resistance Transcription Factor 1 (ART1) contributes to natural variation in rice A1 resistance. Plant Direct 1(4):1-17. GIFS Researcher: Leon V. Kochian. Article

Dong J, et al. (2019) An Arabidopsis ABC transporter mediates phosphate deficiency-induced remodeling of root architecture by modulating iron homeostatis in roots. Molecular Plant 10(2):244-259 GIFS Researcher: Leon V. Kochian. Article

Doshi R, et al. (2017) Functional characterization and discovery of modulators of SbMATE, the agronomically important aluminium tolerance transporter from Sorghum bicolor. bioRxiv:182964. doi:10.1186/s12870-017-1079-2.GIFS Researcher: Leon V. Kochian. Article

Holen D, et al. (2017) Interdependency of Subsistence and Market Economies in the Arctic. The Economy of the North 2015 (Oslo: Statistics Norway), pp 89–126. GIFS Affiliate Researcher: David Natcher.

Jiang F, et al. (2017) Identification and characterization of suppressor mutants of stop1. BMC Plant Biology 17(1):128. doi:10.1186/s12870-017-1079-2. GIFS Researcher: Leon V. KochianArticle

Kieffer JC, et al. (2017) Application of laser-wakefield-based x-ray source to global food security issues. doi:10.1117/12.2263951. GIFS Researcher: Emil Hallin. Article.

Ligaba A, et al. (2017) Loss-of-function mutation of the calcium sensor CBL1 increases alumninum-snsitivity in Arabidopsis. New Phytologist 214(2):830-841. GIFS Researcher: Leon V. Kochian. Article

Lovell JT, Williamson RJ, Wright SI, McKay JK, Sharbel TF (2017) Mutation Accumulation in an Asexual Relative of Arabidopsis. PLOS Genetics 13(1):e1006550. doi:10.1371/journal.pgen.1006550. Article

Magalhaes JV, de Sousa SM, Guimaraes GT, Kochian LV (2017) The role of root morphology and architecture in phosphorus acquisition: physiological, genetic and molecular basis. Plant Macronutrient Use Efficiency Molecular and Genomic Perspectives in Crop Plants 123-147. Article

Navarro-Dominguez B, et al. (2017) Protein-coding genes in B chromosomes of the grasshopper Eyprepocnemis plorans. Scientific Reports 7:45200. doi:10.1038/srep45200. GIFS Researcher: Timothy Sharbel. Article

Natcher D, Maracle T, Titlichi G, Kassi N (2017) Maintaining Indigenous Traditions in Border Regions of Northern Canada. Indigenous Peoples and Resource Development in Canada (Ontario: Captus Press), pp 262–280. GIFS Affiliate Researcher: David Natcher.

Natcher D, Allen T (2017) Corporate Agricultural Investment in First Nation Reserves in Canada: The Case of One Earth Farms. Journal of Aboriginal Economic Development:73–84. GIFS Affiliate Researcher: David Natcher. 

Otto LG, et al. (2017) Use of genotyping-by-sequencing to determine the genetic structure in the medicinal plant chamomile, and to identify flowering time and alpha-bisabolol associated SNP-loci by genome-wide association mapping. BMC Genomics 18(1):599. doi:10.1186/s12864-017. GIFS Researcher: Timothy Sharbel.

Sarhanova P, et al. (2017) Hybridization drives evolution of apomicts in Rubus subgenus Rubus: evidence from microsatellite markers. Annals of Botany 120(2):317–328. doi:10.1093/aob/mcx033GIFS Researcher: Timothy Sharbel.Article

Scheriau CL, Nuerk NM, Sharbel TF, Koch MA (2017) Cryptic gene pools in the Hypericum perforatum–H. maculatum complex: diploid persistence versus trapped polyploid melting. Annals of Botany 120(6):955–966. doi:10.1093/aob/mcx110.Article

Yan, et al. (2017) Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell 29(12):3012. doi:10.1105/tpc.17.00363d. GIFS Researcher: Leon V. Kochian. Article

Wang Y, et al. (2017) NIP1;2 is a plasma membrane-localized transporter mediating aluminum uptake, translocation, and tolerance in Arabidopsis. Proc Natl Acad Sci USA 114(19):5047. doi:10.1073/pnas.1618557114. GIFS Researcher: Leon V. Kochian.  Article

Xie X, et al. (2017) CRISPR-GE: A Convenient Software Toolkit for CRISPR-Based Genome Editing. Molecular Plant 10(9):1246–1249. doi:10.1016/j.molp.2017.06.004. GIFS Researcher: Xingliang Ma. Article

Zhang Y, Ma X, Xie X, Liu Y-G (2017) Chapter Eight – CRISPR/Cas9-Based Genome Editing in Plants. Progress in Molecular Biology and Translational Science, eds Weeks DP, Yang B (Academic Press), pp 133–150. doi:10.1016/bs.pmbts.2017.03.008. Article

Zhou D (2017) Quantitative iTRAQ proteomics revealed possible roles for antioxidant proteins in sorghum aluminum tolerance. Frontiers Plant Science 7:2043. GIFS Researcher: Leon V. Kochian. Article

2016

Bachmann E, et al. (2016) Profitability and Institutional Constraints to the Adoption of Fertilizer Microdosing in Northwest Benin. Sustainable Agricultural Research 5(3):11–23. GIFS Affiliate Researcher: David Natcher.

Brauer EK, et al. (2016) The Raf-like Kinase ILK1 and the High Affinity K+ Transporter HAK5 Are Required for Innate Immunity and Abiotic Stress Response. Plant Physiology 171(2): 1470-1484. GIFS Researcher: Leon V. Kochian. Article

Kochian LV (2016) Root architecture. Journal of Integrative Plant Biology 58(3): 190-192. Article

Maron LG, Pineros MA, Kochian LV, McCouch SR (2016) Redefining ‘stress resistance genes’, and why it matters. Journal of Experimental Botany 67(19): 5588–5591. Article

Natcher D, Shea S, Rodon T, Southcott C (2016) Constraints to Wildlife Harvesting Among Aboriginal Communities in Alaska and Northern Canada. Food Security 8(6):1153–1167. GIFS Affiliate Researcher: David Natcher.

Natcher D, et al. (2016) Knowledge Diffusion and the Adoption of Fertilizer Microdosing in Northwest Benin. Sustainable Agricultural Research 8(6):1–10. GIFS Affiliate Researcher: David Natcher

Olfert R, Natcher D (2016) Adaptation in a Resource-Based Economy in the Northern Great Plains. Great Plains Research 26:35–49. GIFS Affiliate Researcher: David Natcher.

Piñeros MA, et al. (2016) Evolving technologies for growing, imaging, and analyzing 3D root system architecture of crop plants. Journal of Integrative Plant Biology 58: 230–241. GIFS Researcher: Leon V. Kochian. Article

Rautio A, Natcher D (2016) Food and Water Security in the Arctic. Shared Voices, The UArctic Magazine:28–30. GIFS Affiliate Researcher: David Natcher. 

Sharma T, Dreyer I, Kochian LV, Piñeros MA (2016) The ALMT family of organic acid transporters in plants and their ınvolvement in detoxification and nutrient security. Frontiers in Plant Science 7:1488. Article

Southcott C, Abele F, Natcher D, Parlee B (2016) What Do We Need to Know about Extractive Resource Development in the North. Northern Public Affairs 4(3):55–57. GIFS Affiliate Researcher: David Natcher.

Zhang Z. et al. (2016) Vascular-mediated signaling involved in early phosphate stress response in plants. Nature Plants 2:16033. GIFS Researcher: Leon V. Kochian. Article

2015

Dale C, Natcher D (2015) What Is Old is New Again: The Reintroduction of Indigenous Fisheries Technologies. Local Environment: The International Journal of Justice and Sustainability20(11):1309–1321.http://dx.doi.org/10.1080/13549839.2014.902371. GIFS Affiliate Researcher: David Natcher. 

Maclean K, Robinson C, Natcher D (2015) Aboriginal Discursive Strategies for Participation in Natural Resource Management in Australia and Canada. Society and Natural Resources28(2):197–211. http://dx.doi.org/10.1080/08941920.2014.928396. GIFS Affiliate Researcher: David Natcher.

Minielly C, et al. (2015) Visualizing Relationships in Interdisciplinary Research with Geographical Information Systems: A Case Study Utilizing Food Security Research in Sahelian West Africa. University of Saskatchewan Undergraduate Research Journal2(1):1–10. GIFS Affiliate Researcher: David Natcher. Article.

Natcher D (2015) Social Capital and the Vulnerability of Aboriginal Food Systems in Canada. Human Organization 74(3):230–242. GIFS Affiliate Researcher: David Natcher

Natcher D, Castro D, Felt L (2015) Hunter Support Programs and the Northern Social Economy. Northern Communities Working Together: The Social Economy of Canada’s North(Toronto: University of Toronto Press, Toronto), pp 189–203. GIFS Affiliate Researcher: David Natcher

Staples K, Natcher D (2015) Gender, Critical Mass, and Natural Resource Co-Management in the Yukon. Northern Review 41:139–155. GIFS Affiliate Researcher: David Natcher.

2014

Natcher D, Schmid T, Allen T (2014) Balancing Politics and the Dispersal of Business Revenues Among First Nations in Saskatchewan, Canada. Journal of Aboriginal Economic Development9(1):16–26. GIFS Affiliate Researcher: David Natcher

Reed M, Scott A, Natcher D, Johnston M (2014) Linking Gender, Climate Change, Adaptive Capacity and Forest-based Communities in Canada. Canadian Journal of Forest Research44. GIFS Affiliate Researcher: David Natcher. 

*Names highlighted in bold represent GIFS members.